write_lines
Write array to file as lines
File write_lines(Array[String])
Writes a file with one line for each element in a Array[String]. All lines are terminated by the newline (\n) character (following the POSIX standard). If the Array is empty, an empty file is written.
Parameters
Array[String]: Array of strings to write.
Returns: A File.
Example: write_lines_task.wdl
version 1.2
task write_lines {
input {
Array[String] array = ["first", "second", "third"]
}
command <<<
paste -s -d'\t' ~{write_lines(array)}
>>>
output {
String s = read_string(stdout())
}
requirements {
container: "ubuntu:latest"
}
}Example input:
{}
Example output:
{
"write_lines.s": "first\tsecond\tthird"
}The actual command line might look like:
paste -s -d'\t' /local/fs/tmp/array.txt
And /local/fs/tmp/array.txt would contain:
first\nsecond\nthird